Basic Information
Locus ID:
nbis-gene-6903
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Alfin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00005.1 | 3927998 | 3932872 | + | nbis-gene-6903 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 12,366.66 Da | 43.66 | 54.82 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15613 | PHD_AL_plant | 58 | 108 | 7.36244E-28 | IPR044104 |
| Pfam | PF00628 | PHD-finger | 59 | 107 | 9.0E-11 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 48 | 109 | 4.21E-19 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 48 | 107 | 1.3E-25 | IPR013083 |
| SMART | SM00249 | PHD_3 | 58 | 106 | 1.4E-9 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 56 | 108 | 9.2675 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 59 | 105 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 51 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05610.1 | alfin-like 1. AL1 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA. | 0 |
| RefSeq | XP_012701391.1 | PHD finger protein ALFIN-LIKE 1 [Setaria italica] | 0 |
| A2Y0Q2 | PHD finger protein ALFIN-LIKE 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18576 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5J9UDF0 | PHD-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_31392 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 4 | Ag1G00638, Ag1G00639, Ag7G00403, Ag7G01840 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G005030 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G26289 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5333 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG067680 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6903 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7207 |