Basic Information
Locus ID:
nbis-gene-6893
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
rRNA N-glycosidase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00005.1 | 3880812 | 3881609 | + | nbis-gene-6893 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.34 | 28,607.58 Da | 36.94 | 91.06 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 18 | 213 | 4.8E-55 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 9 | 247 | 5.63E-54 | IPR036041 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 1 | 170 | 6.5E-52 | IPR016138 |
| Gene3D | G3DSA:4.10.470.10 | Ricin (A Subunit), domain 2 | 171 | 265 | 1.1E-36 | IPR016139 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 19 | 32 | 2.7E-7 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 69 | 84 | 2.7E-7 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 159 | 179 | 2.7E-7 | IPR017989 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_040385856.1 | protein synthesis inhibitor II-like [Oryza brachyantha] | 0 |
| P04399 | Protein synthesis inhibitor II OS=Hordeum vulgare OX=4513 GN=RIP30A PE=1 SV=1 | 0 | |
| TrEMBL | A0A1E5VQL8 | rRNA N-glycosylase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0011580 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology