Basic Information
Locus ID:
nbis-gene-6868
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00005.1 | 3769832 | 3773883 | - | nbis-gene-6868 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.32 | 46,548.37 Da | 30.73 | 79.45 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 262 | 286 | 0.036 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 29 | 288 | 8.14E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 45 | 334 | 1.2E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 17 | 69 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 246 | 287 | 0.42 | IPR001680 |
| SMART | SM00320 | WD40_4 | 203 | 243 | 0.0084 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56440.1 | homolog of yeast autophagy 18 (ATG18) D. | 0 |
| RefSeq | XP_039846342.1 | autophagy-related protein 18d-like [Panicum virgatum] | 0 |
| Q0WPK3 | Autophagy-related protein 18d OS=Arabidopsis thaliana OX=3702 GN=ATG18D PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6SHR5 | Autophagy-related protein 18d-like OS=Panicum miliaceum OX=4540 GN=C2845_PM07G00080 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology