Basic Information
Locus ID:
nbis-gene-6840
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
ABC transporter C family member 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00005.1 | 3618003 | 3624842 | - | nbis-gene-6840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.90 | 161,155.00 Da | 40.77 | 104.65 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 911 | 1205 | 2.43486E-93 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 607 | 807 | 1.30515E-109 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 294 | 581 | 2.84678E-95 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1228 | 1448 | 1.09406E-120 | - |
| Pfam | PF00005 | ABC transporter | 625 | 759 | 9.6E-20 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1247 | 1395 | 7.2E-28 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 913 | 1154 | 1.8E-30 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 297 | 560 | 4.9E-23 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 899 | 1211 | 4.58E-53 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 604 | 829 | 1.7E-54 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 283 | 589 | 7.06E-32 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1219 | 1460 | 2.81E-65 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1214 | 1466 | 5.9E-77 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 592 | 841 | 1.7E-74 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 873 | 1211 | 6.5E-63 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 272 | 589 | 2.2E-47 | IPR036640 |
| SMART | SM00382 | AAA_5 | 634 | 807 | 1.0E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1256 | 1447 | 2.7E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 913 | 1193 | 36.890965 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 293 | 573 | 31.209581 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1230 | 1464 | 16.920238 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 607 | 830 | 22.962624 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 732 | 746 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 847 | 862 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 863 | 885 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 846 | 885 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_020398877.1 | ABC transporter C family member 3 [Zea mays] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A804UFN7 | ABC transporter C family member 3 OS=Zea mays OX=4577 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology