Basic Information
Locus ID:
nbis-gene-6759
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
UBC3
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00005.1 | 3193351 | 3197225 | - | nbis-gene-6759 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 12,594.02 Da | 57.77 | 62.43 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 104 | 1.84111E-38 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 8 | 69 | 1.3E-16 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 70 | 103 | 8.1E-6 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 1 | 109 | 1.61E-35 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 74 | 111 | 8.2E-10 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 73 | 9.8E-29 | IPR016135 |
| SMART | SM00212 | ubc_7 | 7 | 109 | 2.7E-19 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 4 | 111 | 25.596806 | IPR000608 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02760.1 | ubiquiting-conjugating enzyme 2. ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene. | 0 |
| RefSeq | XP_025794806.1 | ubiquitin-conjugating enzyme E2 2-like [Panicum hallii] | 0 |
| P25866 | Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum OX=4565 GN=UBC2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J5FMF2 | UBC core domain-containing protein OS=Zingiber officinale OX=94328 GN=ZIOFF_055813 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology