Basic Information
Locus ID:
nbis-gene-6562
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00005.1 | 1975997 | 1980028 | - | nbis-gene-6562 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.97 | 43,302.04 Da | 54.13 | 63.06 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 205 | 238 | 2.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 251 | 285 | 4.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 203 | 380 | 5.8E-26 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 194 | 397 | 9.0E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 199 | 238 | 1.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 249 | 286 | 1.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 341 | 377 | 37.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 206 | 238 | 13.816853 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 206 | 238 | 11.444681 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 364 | 378 | 3.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 273 | 287 | 3.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 225 | 239 | 3.3E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_039811404.1 | zinc finger CCCH domain-containing protein 17-like isoform X1 [Panicum virgatum] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1E5VG63 | Zinc finger CCCH domain-containing protein 17 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0014865 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology