Basic Information
Locus ID:
nbis-gene-6548
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00005.1 | 1883220 | 1887356 | - | nbis-gene-6548 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.08 | 52,104.39 Da | 52.43 | 71.25 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 423 | 466 | 5.04028E-18 | - |
| CDD | cd16454 | RING-H2_PA-TM-RING | 246 | 289 | 7.5518E-17 | - |
| Pfam | PF13639 | Ring finger domain | 246 | 289 | 7.5E-13 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 423 | 466 | 4.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 423 | 472 | 9.84E-20 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 246 | 295 | 4.29E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 386 | 472 | 1.5E-19 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 244 | 294 | 3.7E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 424 | 465 | 1.3E-6 | IPR001841 |
| SMART | SM00184 | ring_2 | 247 | 288 | 2.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 247 | 289 | 12.489278 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 424 | 466 | 12.666314 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 375 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 497 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 392 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002455532.1 | E3 ubiquitin-protein ligase EL5 [Sorghum bicolor] | 0 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6SPJ8 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM07G08150 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH02.1452, BH02.1524 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1AG0014460 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0233030.1.CDS1 ... |
| Poaceae | Oryza coarctata | 1 | Oco02G009280 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g20910.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G134700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G021900, Chr08G007690 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G156100, Tel6E01G148600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG010650, gene_TRIDC3BG014430 |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G087900.1.cds1, TraesCS3B02G103300.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb130410_P001, Zm00001eb340160_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-48940, nbis-gene-6548 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10213, Zma_g7881 |