Basic Information
Locus ID:
nbis-gene-6450
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
JAB/MPN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00005.1 | 1235205 | 1244490 | - | nbis-gene-6450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 53,444.46 Da | 46.59 | 83.51 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08969 | USP8 dimerisation domain | 88 | 176 | 2.5E-9 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 409 | 475 | 2.0E-8 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 411 | 476 | 1.26E-9 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 398 | 481 | 1.6E-29 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 80 | 208 | 4.6E-27 | - |
| ProSiteProfiles | PS50249 | MPN domain profile. | 369 | 482 | 13.528669 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 330 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_004968695.1 | AMSH-like ubiquitin thioesterase 3 [Setaria italica] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9UBA4 | MPN domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_30629 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology