halophFGD

Basic Information

Locus ID: nbis-gene-633

Species & Taxonomic ID: Zoysia japonica & 309978

Genome Assembly: GCA_040438285.1

Description: WD domain, G-beta repeat

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Zjn_sc00001.1	2798475	2801050	-	nbis-gene-633

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.43	36,314.73 Da	38.64	81.33	-0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	22	333	1.61914E-78	-
Pfam	PF00400	WD domain, G-beta repeat	164	202	2.0E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	295	333	5.0E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	22	53	3.1E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	249	290	1.7E-6	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	64	99	1.3E-7	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	122	160	1.0E-6	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	16	333	1.28E-86	IPR036322
Gene3D	G3DSA:2.130.10.10	-	8	337	8.2E-111	IPR015943
SMART	SM00320	WD40_4	60	99	2.6E-9	IPR001680
SMART	SM00320	WD40_4	205	245	9.3	IPR001680
SMART	SM00320	WD40_4	163	202	2.4E-11	IPR001680
SMART	SM00320	WD40_4	120	160	6.2E-10	IPR001680
SMART	SM00320	WD40_4	293	334	0.0014	IPR001680
SMART	SM00320	WD40_4	248	290	3.0E-4	IPR001680
SMART	SM00320	WD40_4	18	57	3.4E-7	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	127	169	15.588017	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	170	207	12.446495	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	67	101	14.652308	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	67	101	12.103769	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	255	292	8.913786	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	255	299	11.176815	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	170	211	16.523727	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	25	66	9.639578	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	127	165	11.73468	-
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	277	291	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	147	161	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	189	203	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	86	100	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	147	161	7.7E-9	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	86	100	7.7E-9	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	189	203	7.7E-9	IPR020472

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14963 (COMPASS component SWD3)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G02730.1	Transducin/WD40 repeat-like superfamily protein.
RefSeq	XP_034581247.1	COMPASS-like H3K4 histone methylase component WDR5B [Setaria viridis]
Swiss-Prot	Q9SY00	COMPASS-like H3K4 histone methylase component WDR5B OS=Arabidopsis thaliana OX=3702 GN=WDR5B PE=1 SV=1
TrEMBL	A0A4U6W0M2	WD_REPEATS_REGION domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_2G372500v2 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg35306, jg39882
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10152, gene_13572
Amaranthaceae	Atriplex hortensis	1	Ah037249
Amaranthaceae	Beta vulgaris	2	BVRB_4g074580, BVRB_5g119310
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg17396, Sbi_jg30720, Sbi_jg58546, Sbi_jg62046
Amaranthaceae	Salicornia europaea	2	Seu_jg28415, Seu_jg660
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00004978
Amaranthaceae	Suaeda glauca	4	Sgl24276, Sgl29451, Sgl55025, Sgl80526
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000009682, gene:ENSEOMG00000029317 ... gene:ENSEOMG00000040311
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.4AG0002860, CQ.Regalona.r1.4BG0003010
Anacardiaceae	Pistacia vera	2	pistato.v30056180, pistato.v30204350
Apiaceae	Apium graveolens	2	Ag10G00729, Ag4G01185
Arecaceae	Cocos nucifera	6	COCNU_05G000970, COCNU_06G014350, COCNU_06G019260 ... COCNU_08G011030, COCNU_14G012340, contig68953594G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103704252, gene-LOC103705709, gene-LOC103707622 ... gene-LOC120106995, gene-LOC120111129
Asparagaceae	Asparagus officinalis	1	AsparagusV1_03.719.V1.1
Asteraceae	Flaveria trinervia	2	Ftri10G26086, Ftri17G18327
Brassicaceae	Arabidopsis thaliana	2	AT3G49660.1, AT4G02730.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10010551m.g.v1.0, Thhalv10022457m.g.v1.0 ... Thhalv10023908m.g.v1.0, Thhalv10028762m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp5g12420.v2.2, Sp6g02690.v2.2
Brassicaceae	Brassica nigra	3	BniB05g055250.2N, BniB08g045430.2N, BniB08g063320.2N
Casuarinaceae	Casuarina glauca	1	Cgl06G0430
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno06g01100, gene.Cymno06g11640
Dunaliellaceae	Dunaliella salina	2	Dusal.0127s00025.v1.0, Dusal.2856s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g09460, gene.Thate09g06630
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.1454, evm.TU.LG04.1083, evm.TU.LG10.567
Plantaginaceae	Plantago ovata	3	Pov_00008045, Pov_00024139, Pov_00033976
Plumbaginaceae	Limonium bicolor	3	Lb3G15846, Lb4G23840, Lb4G23844
Poaceae	Echinochloa crus-galli	7	AH01.761, AH02.2714, AH03.3413, BH01.903, BH03.3631 ... CH01.921, CH03.3832
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_3BG0263400, gene-QOZ80_7AG0573580 ... gene-QOZ80_7BG0604880
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0135250.1, HORVU.MOREX.r3.4HG0338790.1
Poaceae	Lolium multiflorum	2	gene-QYE76_040191, gene-QYE76_040541
Poaceae	Oryza coarctata	3	Oco05G022250, Oco06G023140, Oco14G011270
Poaceae	Oryza sativa	2	LOC_Os03g51550.2, LOC_Os07g38430.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G097800, gene-BS78_02G322200
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0304498, Pt_Chr0304575
Poaceae	Sporobolus alterniflorus	7	Chr01G006520, Chr04G027630, Chr07G026550, Chr12G030960 ... Chr19G003920, Chr24G010700, Chr27G013340
Poaceae	Thinopyrum elongatum	2	Tel2E01G377000, Tel4E01G096100
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG025340, gene_TRIDC2BG029800 ... gene_TRIDC4AG040350, gene_TRIDC4BG008810
Poaceae	Triticum aestivum	6	TraesCS2A02G196900.1, TraesCS2B02G224500.1 ... TraesCS2D02G204900.1, TraesCS4A02G258000.1, TraesCS4B02G056500.1, TraesCS4D02G056800.1
Poaceae	Zea mays	5	Zm00001eb055840_P001, Zm00001eb270960_P001 ... Zm00001eb276600_P001, Zm00001eb325000_P001, Zm00001eb325010_P001
Poaceae	Zoysia japonica	4	nbis-gene-14920, nbis-gene-15990, nbis-gene-29410 ... nbis-gene-633
Poaceae	Zoysia macrostachya	3	Zma_g2906, Zma_g585, Zma_g6694
Portulacaceae	Portulaca oleracea	1	evm.TU.LG14.1612
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g21290, gene.Posoc03g05020, gene.Posoc03g26900
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_2_RagTag.305, evm.TU.Scaffold_6_RagTag.1740
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-17420, nbisL1-mrna-4886
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-11893, nbisL1-mrna-19088
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-12028, nbisL1-mrna-9833
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000009l.771, evm.TU.utg000011l.1059
Rhizophoraceae	Kandelia obovata	2	Maker00005699, Maker00008120
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-15415, nbisL1-mrna-2488
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-3346, nbisL1-mrna-6081
Salicaceae	Populus euphratica	5	populus_peu05212, populus_peu09234, populus_peu16798 ... populus_peu23727, populus_peu32714
Solanaceae	Lycium barbarum	2	gene-LOC132610932, gene-LOC132622208
Solanaceae	Solanum chilense	1	SOLCI004978600
Solanaceae	Solanum pennellii	2	gene-LOC107011469, gene-LOC107031421
Tamaricaceae	Reaumuria soongarica	3	STRG.10373_chr07_-, STRG.17356_chr09_-, gene_4734
Tamaricaceae	Tamarix chinensis	3	TC02G1598, TC02G2983, TC07G2682
Zosteraceae	Zostera marina	2	Zosma05g23000.v3.1, Zosma06g02780.v3.1