Basic Information
Locus ID:
nbis-gene-6249
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00004.1 | 6076481 | 6077755 | - | nbis-gene-6249 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 45,043.26 Da | 56.20 | 99.72 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 9 | 50 | 1.49829E-18 | - |
| Pfam | PF04564 | U-box domain | 5 | 73 | 8.3E-19 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 73 | 2.17E-24 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 112 | 401 | 4.99E-15 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 85 | 7.2E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 271 | 406 | 3.3E-8 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 94 | 270 | 4.9E-8 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 8 | 71 | 1.3E-23 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 4 | 78 | 26.538866 | IPR003613 |
| Coils | Coil | Coil | 116 | 136 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_025826122.1 | E3 ubiquitin-protein ligase PUB23-like [Panicum hallii] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7D1Y2 | RING-type E3 ubiquitin transferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_7G339700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology