Basic Information
Locus ID:
nbis-gene-6202
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00004.1 | 5909041 | 5914153 | + | nbis-gene-6202 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.25 | 79,704.88 Da | 52.52 | 68.69 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 402 | 439 | 1.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 539 | 573 | 0.06 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 361 | 397 | 2.5E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 242 | 275 | 1.5E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 238 | 577 | 1.12E-53 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 346 | 622 | 2.6E-46 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 201 | 300 | 3.4E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 237 | 276 | 1.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 533 | 574 | 0.15 | IPR001680 |
| SMART | SM00320 | WD40_4 | 492 | 532 | 54.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 682 | 727 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 400 | 439 | 2.6E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 441 | 480 | 7.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 359 | 397 | 5.9E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 244 | 281 | 11.81377 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 366 | 406 | 14.552052 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 366 | 400 | 10.970139 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 244 | 285 | 14.752563 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 406 | 441 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 406 | 441 | 10.469233 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 263 | 277 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 384 | 398 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 263 | 277 | 1.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 384 | 398 | 1.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 426 | 440 | 1.0E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 618 | 649 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 669 | 694 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 614 | 694 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_004960064.1 | WD repeat-containing protein 44 [Setaria italica] | 0 |
| Q498F0 | WD repeat-containing protein 44 OS=Xenopus laevis OX=8355 GN=wdr44 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9TYX5 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_40185 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology