Basic Information
Locus ID:
nbis-gene-6086
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Cupin superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00004.1 | 5392316 | 5395507 | - | nbis-gene-6086 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 63,610.94 Da | 52.96 | 90.42 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08007 | Cupin superfamily protein | 244 | 334 | 5.3E-18 | IPR003347 |
| SUPERFAMILY | SSF48371 | ARM repeat | 34 | 515 | 1.57E-7 | IPR016024 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 210 | 358 | 4.94E-24 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 18 | 177 | 1.5E-5 | IPR011989 |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 182 | 356 | 1.0E-35 | - |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 216 | 357 | 17.363283 | IPR003347 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039774366.1 | uncharacterized protein LOC120642052 isoform X1 [Panicum virgatum] | 0 |
| O01658 | Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 OS=Caenorhabditis elegans OX=6239 GN=jmjc-1 PE=3 SV=2 | 0 | |
| TrEMBL | A0A1E5VGV4 | Bifunctional lysine-specific demethylase and histidyl-hydroxylase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0014624 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg33161 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11116 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015626 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g190100 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25273, Sbi_jg9125 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19470 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011220 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl43043, Sgl43044, Sgl43051, Sgl47863 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000044437 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0014390 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30262610 |
| Apiaceae | Apium graveolens | 2 | Ag2G02681, Ag2G02682 |
| Arecaceae | Cocos nucifera | 1 | contig69644988G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715626 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.653.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G32488 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2040 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2231 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g06440 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0046s00021.v1.0, Dusal.2808s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g11440 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.540 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G31987, Lb6G31988 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2582, BH09.2806, CH09.3005 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0331590 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0202340.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047058 |
| Poaceae | Oryza coarctata | 2 | Oco07G018070, Oco08G017430 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g56405.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G267400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G001940, Chr26G017380 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G845700 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG070390, gene_TRIDC2BG076080 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G500300.1, TraesCS2B02G528200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb432590_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6086 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22139 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG08.1555, evm.TU.LG22.448, evm.TU.LG22.449 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g15040, gene.Posoc03g15050 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1999 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25508 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15038 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4774 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1159 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001398 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14228 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21002 |
| Salicaceae | Populus euphratica | 3 | populus_peu05791, populus_peu11162, populus_peu11163 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12508 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0444 |
| Zosteraceae | Zostera marina | 1 | Zosma03g00200.v3.1 |