Basic Information
Locus ID:
nbis-gene-6012
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Chloride channel protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00004.1 | 5073134 | 5078490 | + | nbis-gene-6012 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 36,788.81 Da | 33.22 | 100.42 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 177 | 237 | 1.97419E-14 | - |
| Pfam | PF00168 | C2 domain | 174 | 237 | 4.8E-12 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 176 | 264 | 9.82E-18 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 168 | 267 | 1.6E-17 | IPR035892 |
| SMART | SM00239 | C2_3c | 120 | 234 | 2.2E-5 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 101 | 235 | 13.326288 | IPR000008 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_015637265.1 | synaptotagmin-5 [Oryza sativa Japonica Group] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9TYB8 | Synaptotagmin-5-like OS=Eragrostis curvula OX=38414 GN=EJB05_39884 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology