Basic Information
Locus ID:
nbis-gene-59271
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Glycosyl hydrolases family 18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc13170.1 | 10611 | 11532 | - | nbis-gene-59271 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.82 | 29,877.51 Da | 43.29 | 81.25 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 10 | 192 | 9.1E-27 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 16 | 196 | 5.5E-20 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 86 | 163 | 1.25E-12 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 4 | 208 | 6.5E-18 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 89 | 163 | 1.4E-11 | IPR029070 |
| SMART | SM00636 | 2g34 | 2 | 192 | 0.0026 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 1 | 209 | 23.355047 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_025825878.1 | class V chitinase-like [Panicum hallii] | 0 |
| A0A1B1J8Z2 | Class V chitinase CHIT5 OS=Lotus japonicus OX=34305 GN=CHIT5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9TR83 | GH18 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_37293 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology