Basic Information
Locus ID:
nbis-gene-59214
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Epidermal growth factor-like domain.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc13081.1 | 5617 | 10756 | + | nbis-gene-59214 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 59,554.50 Da | 53.84 | 71.75 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 219 | 253 | 7.21719E-5 | - |
| Pfam | PF07645 | Calcium-binding EGF domain | 219 | 249 | 3.0E-6 | IPR001881 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 219 | 253 | 1.06E-5 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 219 | 260 | 5.9E-9 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 471 | 508 | 1.1E-5 | - |
| SMART | SM00179 | egfca_6 | 470 | 513 | 0.0021 | IPR001881 |
| SMART | SM00179 | egfca_6 | 219 | 261 | 7.4E-6 | IPR001881 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 219 | 256 | 8.523922 | IPR000742 |
| ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 235 | 246 | - | IPR000152 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 219 | 244 | - | IPR018097 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039824701.1 | putative wall-associated receptor kinase-like 16, partial [Panicum virgatum] | 0 |
| TrEMBL | A0A5J9URJ0 | Protein kinase domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_29038 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0525960, gene-QOZ80_6AG0525980 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0525250.1 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr14G008760 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG078570 |
| Poaceae | Zoysia japonica | 5 | nbis-gene-31881, nbis-gene-31882, nbis-gene-50705 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g29880, Zma_g32067, Zma_g32068 |