Basic Information
Locus ID:
nbis-gene-59064
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the cullin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc11219.1 | 3 | 371 | + | nbis-gene-59064 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.52 | 12,426.13 Da | 54.34 | 81.07 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | NP_001349395.1 | Cullin-4 [Zea mays] | 0 |
| TrEMBL | C4J396 | CYSTM domain-containing protein OS=Zea mays OX=4577 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg25016, jg38756 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22503 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016502 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40625, Sbi_jg50645 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2202 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016658 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl44929, Sgl49691 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011229, gene:ENSEOMG00000032891 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0009330, CQ.Regalona.r1.8BG0010060 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30069590 |
| Apiaceae | Apium graveolens | 1 | Ag6G01121 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G020020, COCNU_14G008550 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721243 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_06.1870.V1.1, AsparagusV1_07.3412.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G14032, Ftri18G00555 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G46210.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000782m.g.v1.0, Thhalv10024458m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g11070.v2.2, Sp7g15740.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g011130.2N, BniB04g015870.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0272 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0385 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g05650 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.1455s00001.v1.0, Dusal.1960s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g22730 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-11750, nbisL1-mrna-4694, nbisL1-mrna-8114 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.569 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00012363, Pov_00013134, Pov_00038486 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.139, BH03.3881, CH01.471 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0213350, gene-QOZ80_3BG0258480 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0516940.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061385 |
| Poaceae | Oryza coarctata | 2 | Oco05G025510, Oco06G026370 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g57290.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G057100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107028 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G003300, Chr04G030110, Chr07G029180, Chr12G035160 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G666100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG061530, gene_TRIDC5BG065610 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G425300.1, TraesCS5B02G427400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb059990_P001, Zm00001eb213380_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-15283, nbis-gene-16412, nbis-gene-59064 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2617, Zma_g335 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.804, evm.TU.LG23.206 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g16310 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.895, evm.TU.Scaffold_16_RagTag.817 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24987 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12972, nbisL1-mrna-3872 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17215, nbisL1-mrna-19195 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.81 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016174 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-78, nbisL1-mrna-8671 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10320, nbisL1-mrna-9118 |
| Salicaceae | Populus euphratica | 4 | populus_peu09053, populus_peu09218, populus_peu09227 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132621551, gene-LOC132640306 |
| Solanaceae | Solanum chilense | 1 | SOLCI004625500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107011416, gene-LOC107011507 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.10641_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1043 |
| Zosteraceae | Zostera marina | 1 | Zosma05g30190.v3.1 |