Basic Information
Locus ID:
nbis-gene-5895
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
meprin and TRAF homology
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00004.1 | 4627224 | 4629206 | + | nbis-gene-5895 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 39,359.55 Da | 46.71 | 86.28 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 112 | 167 | 1.49613E-8 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 192 | 258 | 1.2E-15 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 182 | 325 | 1.18E-23 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 112 | 173 | 1.96E-11 | - |
| Gene3D | G3DSA:1.25.40.420 | - | 296 | 363 | 1.1E-19 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 178 | 267 | 9.1E-20 | IPR011333 |
| SMART | SM00225 | BTB_4 | 200 | 328 | 1.1E-8 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 109 | 167 | 9.830738 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 200 | 257 | 14.832039 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_037431765.1 | BTB/POZ and MATH domain-containing protein 2-like [Triticum dicoccoides] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1Z5RF34 | Speckle-type POZ protein OS=Sorghum bicolor OX=4558 GN=SORBI_3006G222000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology