Basic Information
Locus ID:
nbis-gene-58697
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
SPT16
Description:
Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II. SSRP1 binds specifically to double-stranded DNA (By similarity)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc09091.1 | 152 | 502 | - | nbis-gene-58697 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.07 | 13,593.35 Da | 44.02 | 74.19 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08644 | FACT complex subunit (SPT16/CDC68) | 8 | 104 | 7.0E-29 | IPR013953 |
| Gene3D | G3DSA:2.30.29.150 | - | 52 | 117 | 8.7E-16 | - |
| Gene3D | G3DSA:2.30.29.210 | FACT complex subunit Spt16p/Cdc68p | 2 | 51 | 2.5E-8 | - |
| SMART | SM01286 | SPT16_2 | 1 | 104 | 8.0E-25 | IPR013953 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10710.3 | - | 0 |
| RefSeq | XP_025823897.1 | FACT complex subunit SPT16 [Panicum hallii] | 0 |
| Q8H6B1 | FACT complex subunit SPT16 OS=Zea mays OX=4577 GN=SPT16 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1Z5RAM2 | SPT16 domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3007G192600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg26490, jg28277, jg30002, jg30003 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10261 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005364 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g079740 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17590, Sbi_jg62262 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg839 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007391 |
| Amaranthaceae | Suaeda glauca | 11 | Sgl14225, Sgl14407, Sgl19371, Sgl19576, Sgl19577, Sgl45926 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000009507, gene:ENSEOMG00000029745 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1AG0000310, CQ.Regalona.r1.4AG0004890 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30095750 |
| Apiaceae | Apium graveolens | 4 | Ag1G00560, Ag2G00322, Ag6G02010, Ag6G02871 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G002440, COCNU_12G001840 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103713979, gene-LOC103717831 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.2247.V1.1, AsparagusV1_07.2829.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G21229 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G10670.1, AT4G10710.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028377m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g06780.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g041080.2N, BniB05g058310.2N, BniB08g051870.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G0475, Ceq06G0476 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G0486, Cgl06G0487 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g04020 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0167s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g00020 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8272 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.1651, evm.TU.LG03.1652 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038171 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G06698, Lb1G06711 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.3378, AH09.531, BH01.4725, BH09.679 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4AG0322830, gene-QOZ80_4BG0356180 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0104510.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 7 | gene-QYE76_021674, gene-QYE76_021696, gene-QYE76_030380 ... |
| Poaceae | Oryza coarctata | 3 | Oco07G002930, Oco08G003260, Oco23G005990 |
| Poaceae | Oryza sativa | 3 | LOC_Os04g25550.1, LOC_Os08g31240.1, LOC_Os12g26030.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G130800, gene-BS78_10G036900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107714 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G015870, Chr26G004020 |
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G054000, Tel2E01G054900, Tel2E01G055400 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG007560, gene_TRIDC2BG002050 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS2A02G017400.1, TraesCS2A02G069500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb229990_P001 |
| Poaceae | Zoysia japonica | 5 | nbis-gene-49057, nbis-gene-49081, nbis-gene-49759 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g19462, Zma_g21080 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG08.1261, evm.TU.LG08.1263, evm.TU.LG22.166 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g00880 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.26, evm.TU.Scaffold_1_RagTag.27 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-2860, nbisL1-mrna-2936, nbisL1-mrna-8255 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3800, nbisL1-mrna-7793 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13634, nbisL1-mrna-5124 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000012l.12, evm.TU.utg000009l.12 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006202, Maker00011133 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13027, nbisL1-mrna-19927 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16095, nbisL1-mrna-24 |
| Salicaceae | Populus euphratica | 5 | populus_peu13175, populus_peu13176, populus_peu13177 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598495, gene-LOC132598497 |
| Solanaceae | Solanum chilense | 3 | SOLCI003275300, SOLCI003275400, SOLCI007501600 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107002544, gene-LOC107004067, gene-LOC107008231 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.32274_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1430 |
| Zosteraceae | Zostera marina | 1 | Zosma04g04850.v3.1 |