Basic Information
Locus ID:
nbis-gene-58197
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc06873.1 | 559 | 915 | - | nbis-gene-58197 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 8,859.06 Da | 69.81 | 92.50 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16656 | RING-Ubox_PRP19 | 28 | 77 | 1.8442E-25 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 27 | 74 | 2.3E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 26 | 80 | 7.2E-22 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 27 | 78 | 1.1E-6 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 19 | 80 | 15.570198 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 35 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33340.3 | MOS4-associated complex 3B. Encodes MAC3B, a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19. Associated with the MOS4-Associated Complex (MAC). Involved in plant innate immunity. | 0 |
| RefSeq | XP_048549351.1 | pre-mRNA-processing factor 19-like [Triticum urartu] | 0 |
| Q9AV81 | Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica OX=39947 GN=PRP19 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8R7JYX7 | Pre-mRNA-processing factor 19 OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg49689, Sbi_jg61105 |
| Brassicaceae | Brassica nigra | 1 | BniB03g000920.2N |
| Poaceae | Zoysia japonica | 2 | nbis-gene-21216, nbis-gene-58197 |