Basic Information
Locus ID:
nbis-gene-57947
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc06132.1 | 2 | 385 | + | nbis-gene-57947 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 13,339.21 Da | 73.43 | 72.28 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 50 | 92 | 6.9E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 49 | 98 | 5.81E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 12 | 97 | 1.5E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 50 | 91 | 1.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 50 | 92 | 12.356501 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 127 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66070.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002453609.2 | E3 ubiquitin-protein ligase EL5 [Sorghum bicolor] | 0 |
| Q9FKX5 | NEP1-interacting protein-like 1 OS=Arabidopsis thaliana OX=3702 GN=ATL27 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9VEI0 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_25073 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology