halophFGD

Basic Information

Locus ID: nbis-gene-57883

Species & Taxonomic ID: Zoysia japonica & 309978

Genome Assembly: GCA_040438285.1

Description: Reverse transcriptase (RNA-dependent DNA polymerase)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Zjn_sc05909.1	26	1100	+	nbis-gene-57883

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.86	38,971.63 Da	47.19	69.78	-0.37

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00665	Integrase core domain	7	107	7.7E-14	IPR001584
SUPERFAMILY	SSF53098	Ribonuclease H-like	9	179	5.69E-45	IPR012337
Gene3D	G3DSA:3.30.420.10	-	3	178	1.2E-44	IPR036397
ProSiteProfiles	PS50994	Integrase catalytic domain profile.	4	170	25.514217	IPR001584
MobiDBLite	mobidb-lite	consensus disorder prediction	269	358	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	333	351	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	275	308	-	-

Gene Ontology

Biological Process:

GO:0015074 (DNA integration)

Molecular Function:

GO:0003676 (nucleic acid binding)

Best hit

Source	Best Hit ID	Description
RefSeq	XP_022681836.1	uncharacterized protein LOC111257069 [Setaria italica]
Swiss-Prot	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
TrEMBL	A0A453QBW5	Integrase catalytic domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Asteraceae	Flaveria trinervia	4	Ftri18G33038, Ftri6G26243, Ftri6G34149, FtriNA26240
Brassicaceae	Brassica nigra	3	BniB02g044040.2N, BniB05g046390.2N, BniB07g028240.2N
Plantaginaceae	Plantago ovata	2	Pov_00029076, Pov_00039561
Poaceae	Echinochloa crus-galli	7	AH01.168, AH01.4944, AH04.1262, AH05.424, AH07.1449 ... CH03.241, CH08.965
Poaceae	Eleusine coracana subsp. coracana	85	gene-QOZ80_1AG0019300, gene-QOZ80_1AG0021820 ... gene-QOZ80_1AG0024230, gene-QOZ80_1AG0037390, gene-QOZ80_1BG0049180, gene-QOZ80_1BG0085100, gene-QOZ80_2AG0105550, gene-QOZ80_2AG0133820, gene-QOZ80_2AG0148240, gene-QOZ80_2BG0158440, gene-QOZ80_2BG0169390, gene-QOZ80_2BG0181270, gene-QOZ80_2BG0183300, gene-QOZ80_2BG0199500, gene-QOZ80_2BG0201130, gene-QOZ80_2BG0205470, gene-QOZ80_2BG0206350, gene-QOZ80_3AG0208060, gene-QOZ80_3AG0220240, gene-QOZ80_3AG0224320, gene-QOZ80_3AG0225270, gene-QOZ80_3AG0227500, gene-QOZ80_3AG0235790, gene-QOZ80_3AG0243220, gene-QOZ80_3AG0244010, gene-QOZ80_3AG0245460, gene-QOZ80_3BG0256980, gene-QOZ80_3BG0283640, gene-QOZ80_4AG0323660, gene-QOZ80_4BG0329460, gene-QOZ80_4BG0330660, gene-QOZ80_4BG0330910, gene-QOZ80_4BG0332300, gene-QOZ80_4BG0350850, gene-QOZ80_5AG0362120, gene-QOZ80_5AG0362550, gene-QOZ80_5AG0365140, gene-QOZ80_5AG0388210, gene-QOZ80_5AG0395900, gene-QOZ80_5AG0398000, gene-QOZ80_5AG0407020, gene-QOZ80_5BG0416820, gene-QOZ80_5BG0421890, gene-QOZ80_5BG0426390, gene-QOZ80_5BG0429910, gene-QOZ80_5BG0452680, gene-QOZ80_5BG0453400, gene-QOZ80_5BG0455110, gene-QOZ80_5BG0456990, gene-QOZ80_6AG0507950, gene-QOZ80_6AG0522670, gene-QOZ80_6AG0526690, gene-QOZ80_6AG0534700, gene-QOZ80_6BG0459300, gene-QOZ80_6BG0460940, gene-QOZ80_6BG0494750, gene-QOZ80_6BG0496090, gene-QOZ80_6BG0502860, gene-QOZ80_7AG0560080, gene-QOZ80_7AG0575580, gene-QOZ80_7BG0584000, gene-QOZ80_7BG0585870, gene-QOZ80_7BG0595270, gene-QOZ80_7BG0595920, gene-QOZ80_7BG0598960, gene-QOZ80_8AG0618400, gene-QOZ80_8AG0619760, gene-QOZ80_8AG0620590, gene-QOZ80_8AG0639870, gene-QOZ80_8BG0656020, gene-QOZ80_8BG0665070, gene-QOZ80_9AG0670230, gene-QOZ80_9AG0673270, gene-QOZ80_9AG0674220, gene-QOZ80_9AG0675740, gene-QOZ80_9AG0681710, gene-QOZ80_9BG0694080, gene-QOZ80_9BG0701040, gene-QOZ80_9BG0709940, gene-QOZ80_9BG0711120, gene-QOZ80_9BG0711600, gene-QOZ80_UnG0724950, gene-QOZ80_UnG0726010, gene-QOZ80_UnG0726990, gene-QOZ80_UnG0730010
Poaceae	Lolium multiflorum	12	gene-QYE76_002090, gene-QYE76_004107, gene-QYE76_010998 ... gene-QYE76_013193, gene-QYE76_029165, gene-QYE76_037880, gene-QYE76_051587, gene-QYE76_052644, gene-QYE76_053432, gene-QYE76_056804, gene-QYE76_058369, gene-QYE76_066013
Poaceae	Oryza coarctata	2	Oco06G010700, Oco21G004780
Poaceae	Sporobolus alterniflorus	17	Chr01G029280, Chr04G018110, Chr04G029980, Chr05G019600 ... Chr05G026820, Chr08G012260, Chr0G001440, Chr11G014150, Chr12G014230, Chr15G010750, Chr19G011560, Chr20G012820, Chr22G007660, Chr24G012860, Chr26G013550, Chr27G000450, Chr30G002280
Poaceae	Zoysia japonica	66	nbis-gene-12256, nbis-gene-12257, nbis-gene-1525 ... nbis-gene-1526, nbis-gene-16914, nbis-gene-17541, nbis-gene-19679, nbis-gene-24621, nbis-gene-27637, nbis-gene-27673, nbis-gene-27674, nbis-gene-33940, nbis-gene-33941, nbis-gene-34280, nbis-gene-34281, nbis-gene-34507, nbis-gene-39486, nbis-gene-39685, nbis-gene-40438, nbis-gene-40687, nbis-gene-41962, nbis-gene-43787, nbis-gene-44380, nbis-gene-44391, nbis-gene-44606, nbis-gene-46358, nbis-gene-46929, nbis-gene-48847, nbis-gene-49079, nbis-gene-50718, nbis-gene-50802, nbis-gene-50849, nbis-gene-51475, nbis-gene-51633, nbis-gene-52384, nbis-gene-52833, nbis-gene-52891, nbis-gene-52892, nbis-gene-53916, nbis-gene-53917, nbis-gene-54339, nbis-gene-54582, nbis-gene-54696, nbis-gene-55542, nbis-gene-55996, nbis-gene-56037, nbis-gene-56213, nbis-gene-56371, nbis-gene-56891, nbis-gene-56941, nbis-gene-56960, nbis-gene-57547, nbis-gene-57579, nbis-gene-57604, nbis-gene-57883, nbis-gene-58199, nbis-gene-58243, nbis-gene-58244, nbis-gene-58280, nbis-gene-58281, nbis-gene-58288, nbis-gene-58660, nbis-gene-59066, nbis-gene-59072, nbis-gene-6411, nbis-gene-643
Poaceae	Zoysia macrostachya	1	Zma_g3359