Basic Information
Locus ID:
nbis-gene-5761
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00004.1 | 4010395 | 4013051 | - | nbis-gene-5761 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.64 | 30,675.18 Da | 68.23 | 47.33 | -1.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 166 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034605654.1 | E3 ubiquitin-protein ligase MBR1-like [Setaria viridis] | 0 |
| TrEMBL | A0A3L6Q9U6 | E3 ubiquitin-protein ligase MBR1 OS=Panicum miliaceum OX=4540 GN=C2845_PM15G20960 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | AH08.801, AH09.2204, BH08.846, BH09.2375, CH08.934 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_4AG0304900, gene-QOZ80_4BG0335860 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0193060.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046124 |
| Poaceae | Oryza coarctata | 4 | Oco07G015150, Oco08G014650, Oco15G004780, Oco16G004480 |
| Poaceae | Oryza sativa | 2 | LOC_Os04g51400.2, LOC_Os08g14320.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G218200, gene-BS78_07G092900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0301410 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr0G027810, Chr16G003160, Chr17G002770, Chr23G003680 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G738600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG062860, gene_TRIDC2BG066550 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G437200.1, TraesCS2B02G456100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb071710_P002, Zm00001eb414540_P002 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-48283, nbis-gene-53678, nbis-gene-5761 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g21921, Zma_g22681, Zma_g23819 |