Basic Information
Locus ID:
nbis-gene-57125
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Small ubiquitinrelated modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc03934.1 | 121 | 474 | - | nbis-gene-57125 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 12,674.10 Da | 44.48 | 83.16 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01763 | Ubl_SUMO_like | 25 | 95 | 7.00744E-14 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 26 | 96 | 4.7E-9 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 18 | 101 | 2.14E-12 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 101 | 2.0E-17 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 23 | 101 | 9.199316 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 0 |
| RefSeq | XP_039814215.1 | small ubiquitin-related modifier 1-like [Panicum virgatum] | 0 |
| P55857 | Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SUMO1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0S4S9 | Ubiquitin-like domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_5NG632003 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology