Basic Information
Locus ID:
nbis-gene-5708
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00004.1 | 3795063 | 3801756 | - | nbis-gene-5708 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.08 | 75,472.15 Da | 62.47 | 64.82 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 366 | 409 | 6.01942E-18 | - |
| Pfam | PF13639 | Ring finger domain | 366 | 409 | 8.9E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 360 | 415 | 2.78E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 342 | 415 | 1.3E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 367 | 408 | 1.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 367 | 409 | 12.872856 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 632 | 657 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 640 | 657 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 506 | - | - |
| Coils | Coil | Coil | 133 | 155 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004976649.1 | E3 ubiquitin-protein ligase Os04g0590900 [Setaria italica] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0A9CP95 | RING-type E3 ubiquitin transferase OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology