Basic Information
Locus ID:
nbis-gene-57008
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc03662.1 | 1362 | 1541 | - | nbis-gene-57008 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.93 | 6,208.98 Da | 56.54 | 64.75 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 1 | 24 | 9.0E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1 | 31 | 1.46E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 52 | 5.4E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1 | 24 | 9.74522 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 59 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58580.1 | TOXICOS EN LEVADURA 63. | 0 |
| RefSeq | XP_039788948.1 | RING-H2 finger protein ATL14-like [Panicum virgatum] | 0 |
| Q9LUZ9 | RING-H2 finger protein ATL63 OS=Arabidopsis thaliana OX=3702 GN=ATL63 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9VCZ9 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_25070 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g24680 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-57008 |