Basic Information
Locus ID:
nbis-gene-56840
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc03293.1 | 451 | 1384 | + | nbis-gene-56840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 12,979.59 Da | 41.47 | 79.58 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 91 | 119 | 4.2E-8 | IPR022052 |
| Gene3D | G3DSA:2.130.10.10 | - | 82 | 120 | 7.8E-8 | IPR015943 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19520.1 | Transducin family protein / WD-40 repeat family protein. Controls flowering. | 0 |
| RefSeq | XP_047056912.1 | WD-40 repeat-containing protein MSI4-like [Lolium rigidum] | 0 |
| O22607 | WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana OX=3702 GN=MSI4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A1D6NE93 | WD-repeat protein RBAP2 OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d043682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27259 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g13230 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-12721, nbis-gene-56840, nbis-gene-57397 |