HalophFGD

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Basic Information
Locus ID: nbis-gene-56758
Species & Taxonomic ID: Zoysia japonica & 309978
Genome Assembly: GCA_040438285.1
Description: RING-H2 zinc finger domain
Maps and Mapping Data
Chromosome Start End Strand ID
Zjn_sc03098.1 1363 1683 + nbis-gene-56758
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
11.58 11,180.23 Da 46.73 122.24 0.71
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Best hit
Source Best Hit ID Description E-value
RefSeq XP_039841806.1 E3 ubiquitin-protein ligase EL5-like [Panicum virgatum] 0
TrEMBL A0A5J9TBK6 RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_42124 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 9 AH06.1883, AH07.1072, BH07.1149, BH07.1152, BH07.1189 ...
BH07.1190, CH06.1925, CH07.967, CH07.968
Poaceae Eleusine coracana subsp. coracana 11 gene-QOZ80_2AG0107800, gene-QOZ80_2AG0107830 ...
gene-QOZ80_2AG0107840, gene-QOZ80_2AG0107850, gene-QOZ80_2BG0161450, gene-QOZ80_2BG0161460, gene-QOZ80_2BG0161480, gene-QOZ80_6AG0541860, gene-QOZ80_6AG0541900, gene-QOZ80_6BG0495080, gene-QOZ80_6BG0495090
Poaceae Hordeum vulgare 5 HORVU.MOREX.r3.5HG0491630.1.CDS1 ...
HORVU.MOREX.r3.6HG0554370.1.CDS1, HORVU.MOREX.r3.7HG0709300.1.CDS1, HORVU.MOREX.r3.7HG0714070.1.CDS1, HORVU.MOREX.r3.7HG0714090.1.CDS1
Poaceae Lolium multiflorum 14 gene-QYE76_022026, gene-QYE76_022032, gene-QYE76_022040 ...
gene-QYE76_032302, gene-QYE76_034100, gene-QYE76_034762, gene-QYE76_034763, gene-QYE76_034765, gene-QYE76_034766, gene-QYE76_034767, gene-QYE76_034904, gene-QYE76_034906, gene-QYE76_034907, gene-QYE76_048062
Poaceae Oryza coarctata 6 Oco03G006780, Oco04G007060, Oco04G007080, Oco04G007090 ...
Oco11G010340, Oco12G010460
Poaceae Oryza sativa 4 LOC_Os02g15020.1, LOC_Os02g15060.1, LOC_Os02g15080.1 ...
LOC_Os06g34400.1
Poaceae Paspalum vaginatum 7 gene-BS78_04G104200, gene-BS78_04G104500 ...
gene-BS78_04G109300, gene-BS78_04G109400, gene-BS78_04G109500, gene-BS78_10G154500, gene-BS78_10G154800
Poaceae Puccinellia tenuiflora 2 Pt_Chr0400171, Pt_Chr0400180
Poaceae Sporobolus alterniflorus 5 Chr02G028440, Chr05G006130, Chr0G013660, Chr0G033260 ...
Chr15G023340
Poaceae Thinopyrum elongatum 6 Tel6E01G218900, Tel6E01G219000, Tel6E01G219100 ...
Tel7E01G570500, Tel7E01G601500, Tel7E01G602500
Poaceae Triticum dicoccoides 8 gene_TRIDC6AG012210, gene_TRIDC6AG012220 ...
gene_TRIDC6AG015500, gene_TRIDC6BG017520, gene_TRIDC6BG021270, gene_TRIDC7AG048560, gene_TRIDC7BG032690, gene_TRIDC7BG038810
Poaceae Triticum aestivum 18 TraesCS5A02G271600.1.cds1, TraesCS5B02G271900.1.cds1 ...
TraesCS5D02G279300.1.cds1, TraesCS6A02G095500.1.cds1, TraesCS6A02G095600.1.cds1, TraesCS6B02G123500.1.cds1, TraesCS6B02G123700.1, TraesCS6D02G086300.1.cds1, TraesCS7A02G348100.1.cds1, TraesCS7A02G372900.1.cds1, TraesCS7A02G373200.1.cds1, TraesCS7B02G235200.1.cds1, TraesCS7B02G253800.1.cds1, TraesCS7B02G254300.1.cds1, TraesCS7B02G255400.1.cds1, TraesCS7D02G330900.1.cds1, TraesCS7D02G349700.1.cds1, TraesCS7D02G350200.1
Poaceae Zea mays 6 Zm00001eb204450_P001, Zm00001eb238220_P001 ...
Zm00001eb238430_P001, Zm00001eb238440_P001, Zm00001eb383450_P001, Zm00001eb383460_P001
Poaceae Zoysia japonica 3 nbis-gene-50888, nbis-gene-56758, nbis-gene-57947
Poaceae Zoysia macrostachya 6 Zma_g12515, Zma_g12518, Zma_g12519, Zma_g12520, Zma_g30649 ...
Zma_g32888
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