Basic Information
Locus ID:
nbis-gene-56612
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the TUB family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc02771.1 | 1601 | 1771 | - | nbis-gene-56612 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.28 | 6,073.88 Da | 74.39 | 66.25 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53320.1 | tubby like protein 7. Member of TLP family | 0 |
| RefSeq | NP_001388460.1 | tubby-like F-box protein 1 [Oryza sativa Japonica Group] | 0 |
| Q5QM27 | Tubby-like F-box protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D6G1H2 | Tubby-like F-box protein 7 OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d011578 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag2G01022 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G61940.1 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0698 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_002965 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0700123 |
| Poaceae | Zea mays | 2 | Zm00001eb109230_P001, Zm00001eb110940_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-155, nbis-gene-33195, nbis-gene-56612 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3633 |