Basic Information
Locus ID:
nbis-gene-55679
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc01118.1 | 1665 | 2582 | + | nbis-gene-55679 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 30,060.64 Da | 63.68 | 76.78 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 244 | 281 | 1.02631E-7 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 241 | 287 | 3.1E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 243 | 288 | 3.33E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 220 | 292 | 7.4E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 244 | 281 | 1.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 244 | 282 | 11.559839 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 259 | 268 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 172 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_014660867.1 | LON peptidase N-terminal domain and RING finger protein 3 [Setaria italica] | 0 |
| TrEMBL | A0A0A9DET2 | RING-type domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology