Basic Information
Locus ID:
nbis-gene-55081
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A- site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00434.1 | 6449 | 9379 | + | nbis-gene-55081 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 12,410.12 Da | 38.36 | 92.28 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00679 | Elongation factor G C-terminus | 50 | 114 | 1.2E-18 | IPR000640 |
| Pfam | PF03764 | Elongation factor G, domain IV | 3 | 48 | 1.1E-11 | IPR005517 |
| SUPERFAMILY | SSF54980 | EF-G C-terminal domain-like | 50 | 114 | 1.82E-17 | IPR035647 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 2 | 49 | 7.84E-12 | IPR020568 |
| Gene3D | G3DSA:3.30.230.10 | - | 1 | 48 | 1.2E-15 | IPR014721 |
| Gene3D | G3DSA:3.30.70.240 | - | 49 | 114 | 5.1E-20 | - |
| SMART | SM00838 | EFG_C_a | 50 | 114 | 2.8E-14 | IPR000640 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G45332.2 | - | 0 |
| RefSeq | XP_021302588.1 | elongation factor G, mitochondrial isoform X2 [Sorghum bicolor] | 0 |
| Q9FE64 | Elongation factor G, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0565500 PE=2 SV=2 | 0 | |
| TrEMBL | A0A453S8C2 | Elongation factor G OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1787 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11196 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001767 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g189370 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40837, Sbi_jg50799 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2349 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023352 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl43481, Sgl48280 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011059, gene:ENSEOMG00000032789 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0012140, CQ.Regalona.r1.8BG0013370 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30002230 |
| Apiaceae | Apium graveolens | 1 | Ag1G00114 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G011170 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702480 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1095.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G31122 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G45332.1, AT2G45030.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001325m.g.v1.0, Thhalv10028174m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g27090.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g003460.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1101 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1122 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g13530 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0369s00012.v1.0, Dusal.0369s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g18790 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.119 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014964 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G19610, Lb3G19611 |
| Poaceae | Echinochloa crus-galli | 4 | AH09.472, BH09.516, CH05.3094, CH09.566 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0524730, gene-QOZ80_6BG0478400 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0712610.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_033777 |
| Poaceae | Oryza coarctata | 1 | Oco05G017020 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g36780.1, LOC_Os03g37110.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G144800, gene-BS78_04G134200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400058, Pt_Chr0400064 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr14G008040, Chr21G008200 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G591700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG046900, gene_TRIDC7BG040830 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G336600.4, TraesCS7B02G248200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb064310_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-31756, nbis-gene-55081 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31999 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1149, evm.TU.LG21.786 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g11250 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1240 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-20932 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8691 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21225 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.767 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009646 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1288 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4836 |
| Salicaceae | Populus euphratica | 2 | populus_peu03370, populus_peu34219 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645763 |
| Solanaceae | Solanum chilense | 1 | SOLCI001542200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006383 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12681 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0708 |
| Zosteraceae | Zostera marina | 1 | Zosma04g08770.v3.1 |