Basic Information
Locus ID:
nbis-gene-54924
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00338.1 | 11513 | 15539 | - | nbis-gene-54924 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.17 | 33,928.55 Da | 44.30 | 74.37 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 50 | 88 | 4.91127E-14 | - |
| CDD | cd03829 | Sina | 166 | 294 | 3.12207E-64 | - |
| Pfam | PF03145 | Seven in absentia protein family | 94 | 293 | 1.9E-78 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 105 | 297 | 5.89E-48 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 44 | 92 | 5.98E-6 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 159 | 293 | 7.2E-38 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 25 | 104 | 1.9E-7 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 105 | 158 | 2.8E-16 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 105 | 165 | 14.142849 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 52 | 88 | 9.1551 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_004984335.1 | E3 ubiquitin-protein ligase SINAT3 [Setaria italica] | 0 |
| Q10L91 | E3 ubiquitin-protein ligase DIS1 OS=Oryza sativa subsp. japonica OX=39947 GN=DIS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WE60 | RING-type E3 ubiquitin transferase OS=Eragrostis curvula OX=38414 GN=EJB05_06588 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology