Basic Information
Locus ID:
nbis-gene-54858
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Prokaryotic homologs of the JAB domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00305.1 | 8392 | 13559 | - | nbis-gene-54858 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 34,364.26 Da | 38.35 | 92.96 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08069 | MPN_RPN11_CSN5 | 19 | 284 | 1.7508E-156 | - |
| Pfam | PF13012 | Maintenance of mitochondrial structure and function | 171 | 292 | 3.7E-14 | IPR024969 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 25 | 136 | 9.2E-33 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 29 | 166 | 2.09E-19 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 16 | 232 | 5.8E-81 | - |
| SMART | SM00232 | pad1_6 | 28 | 163 | 4.0E-49 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 29 | 164 | 36.28302 | IPR037518 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23540.1 | Mov34/MPN/PAD-1 family protein. | 0 |
| RefSeq | XP_002455423.1 | 26S proteasome non-ATPase regulatory subunit 14 homolog [Sorghum bicolor] | 0 |
| Q9LT08 | 26S proteasome non-ATPase regulatory subunit 14 homolog OS=Arabidopsis thaliana OX=3702 GN=RPN11 PE=1 SV=1 | 0 | |
| TrEMBL | B4FLQ8 | 26S proteasome non-ATPase regulatory subunit 14 OS=Zea mays OX=4577 GN=103649975 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg11957, jg22788 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14001 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016369 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg24873, Sbi_jg32558, Sbi_jg8732 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg10824, Seu_jg19867, Seu_jg7452 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015584 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl03874, Sgl04959, Sgl10010, Sgl44899, Sgl45062, Sgl49662 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010997, gene:ENSEOMG00000030544 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0016260 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30044310, pistato.v30045520 |
| Apiaceae | Apium graveolens | 2 | Ag10G02241, Ag4G02789 |
| Arecaceae | Cocos nucifera | 3 | COCNU_04G001160, COCNU_04G015880, COCNU_16G008540 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103704111, gene-LOC103722542, gene-LOC103722649 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.276.V1.1, AsparagusV1_07.108.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri18G27343, Ftri1G10890, Ftri9G14897 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G23540.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10004651m.g.v1.0, Thhalv10008281m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g23650.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g076710.2N, BniB04g003230.2N, BniB07g040660.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1088 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1181 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g02700 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1103s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g12710 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1276 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.459, evm.TU.LG06.460 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00002369, Pov_00013026, Pov_00027653, Pov_00036626 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G20865 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.898, AH05.2430, BH02.1231, BH05.2526, CH02.1357 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0004450, gene-QOZ80_1AG0032370 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0059930.1, HORVU.MOREX.r3.3HG0255730.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_013876, gene-QYE76_018299, gene-QYE76_052340 |
| Poaceae | Oryza coarctata | 6 | Oco01G007420, Oco02G007700, Oco09G007920, Oco10G008170 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os01g16190.1, LOC_Os05g30800.1, LOC_Os06g49020.1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G113100, gene-BS78_09G146300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0401114, Pt_Chr0505271, Pt_Chr0505320 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr03G001480, Chr08G003620, Chr18G009440, Chr20G008800 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G390400, Tel3E01G318600, Tel7E01G699400 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC1AG035720, gene_TRIDC3AG025520 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS1A02G237100.2, TraesCS1D02G235300.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb128130_P001, Zm00001eb197860_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-13942, nbis-gene-24517, nbis-gene-44771 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g22753, Zma_g27195, Zma_g9691 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2783, evm.TU.LG02.212, evm.TU.LG09.1453 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g00490, gene.Posoc04g04950 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.936 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-8855 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8922 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20648 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.292 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003759 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11434 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-17156, nbisL1-mrna-25098 |
| Salicaceae | Populus euphratica | 1 | populus_peu31966 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627884 |
| Solanaceae | Solanum chilense | 1 | SOLCI002880700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018080 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7350 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2943, TC10G2164 |
| Zosteraceae | Zostera marina | 1 | Zosma06g07270.v3.1 |