Basic Information
Locus ID:
nbis-gene-54062
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00209.1 | 46671 | 48413 | + | nbis-gene-54062 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 38,722.66 Da | 32.31 | 86.84 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02243 | cupin_11S_legumin_C | 207 | 361 | 3.02836E-76 | - |
| Pfam | PF00190 | Cupin | 8 | 163 | 5.0E-17 | IPR006045 |
| Pfam | PF00190 | Cupin | 205 | 347 | 2.3E-24 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 8 | 353 | 1.75E-39 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 204 | 364 | 3.9E-49 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 2 | 195 | 9.5E-20 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 204 | 348 | 4.6E-19 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 3 | 166 | 1.0E-18 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 325 | 342 | 1.2E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 267 | 283 | 1.2E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 285 | 300 | 1.2E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 220 | 240 | 1.2E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 303 | 321 | 1.2E-13 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_039798952.1 | 12S seed storage globulin 1-like [Panicum virgatum] | 0 |
| P07728 | Glutelin type-A 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GLUA1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9U4X8 | Cupin type-1 domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_34306 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology