Basic Information
Locus ID:
nbis-gene-5403
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Src homology 3 domains
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00004.1 | 2526899 | 2531000 | - | nbis-gene-5403 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.61 | 25,733.57 Da | 45.59 | 77.46 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50044 | SH3-domain | 154 | 225 | 1.68E-7 | IPR036028 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 2 | 138 | 7.33E-13 | IPR027267 |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 1 | 147 | 5.3E-7 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 188 | 227 | 9.3E-7 | - |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 183 | 232 | 12.956983 | IPR001452 |
| Coils | Coil | Coil | 66 | 86 | - | - |
| Coils | Coil | Coil | 100 | 120 | - | - |
| Coils | Coil | Coil | 29 | 56 | - | - |
| Coils | Coil | Coil | 124 | 144 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.2 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_025825964.1 | SH3 domain-containing protein 2-like [Panicum hallii] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7CY14 | SH3 domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_7G228700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology