Basic Information
Locus ID:
nbis-gene-54004
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00206.1 | 43906 | 45234 | + | nbis-gene-54004 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 44,670.90 Da | 53.05 | 88.55 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 227 | 335 | 1.2E-13 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 42 | 139 | 2.1E-4 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 37 | 152 | 2.35E-12 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 183 | 335 | 3.27E-18 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 195 | 336 | 3.0E-13 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 29 | 179 | 3.9E-8 | IPR036378 |
| SMART | SM00554 | fasc_3 | 231 | 336 | 1.2E-16 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 191 | 333 | 13.274418 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 31 | 178 | 9.601858 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 429 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55730.1 | FASCICLIN-like arabinogalactan 1. fasciclin-like arabinogalactan-protein 1 (Fla1) | 0 |
| RefSeq | XP_025813093.1 | fasciclin-like arabinogalactan protein 1 [Panicum hallii] | 0 |
| Q9FM65 | Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=FLA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6PFQ1 | Fasciclin-like arabinogalactan protein 1 OS=Panicum miliaceum OX=4540 GN=C2845_PM10G10550 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology