Basic Information
Locus ID:
nbis-gene-53963
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
VWA domain containing CoxE-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00205.1 | 52535 | 58248 | - | nbis-gene-53963 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.56 | 33,448.69 Da | 59.17 | 74.84 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13519 | von Willebrand factor type A domain | 216 | 301 | 1.1E-10 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 213 | 301 | 1.04E-15 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 215 | 304 | 1.9E-17 | IPR036465 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 215 | 304 | 10.693128 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 143 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54780.2 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_051222155.1 | uncharacterized protein LOC127340448 [Lolium perenne] | 0 |
| TrEMBL | A0A1E5V836 | Putative receptor-like protein kinase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0017826 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 8 | AH05.388, AH05.865, AH05.867, BH01.4317, BH01.4319, BH05.448 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_9AG0670800, gene-QOZ80_9AG0675400 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_039716, gene-QYE76_058228, gene-QYE76_058230 ... |
| Poaceae | Oryza coarctata | 2 | Oco09G001520, Oco09G001530 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0605438, Pt_Chr0605787 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-18273, nbis-gene-53961, nbis-gene-53963 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17598 |