Basic Information
Locus ID:
nbis-gene-53906
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
chitinase 8
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00203.1 | 7946 | 11949 | - | nbis-gene-53906 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.66 | 44,276.36 Da | 41.02 | 75.46 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 96 | 275 | 6.16775E-78 | - |
| Pfam | PF00182 | Chitinase class I | 96 | 275 | 2.0E-68 | IPR000726 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 335 | 401 | 6.8E-9 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 312 | 401 | 1.35E-13 | IPR011009 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 92 | 275 | 2.05E-61 | IPR023346 |
| Gene3D | G3DSA:1.10.530.10 | - | 88 | 302 | 2.5E-50 | - |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 169 | 216 | 5.4E-14 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 303 | 401 | 8.1E-19 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 332 | 401 | 11.59484 | IPR000719 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 113 | 135 | - | IPR000726 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 338 | 368 | - | IPR017441 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 225 | 235 | - | IPR000726 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_015614506.1 | chitinase 8 [Oryza sativa Japonica Group] | 0 |
| Q7XCK6 | Chitinase 8 OS=Oryza sativa subsp. japonica OX=39947 GN=Cht8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0IVU5 | chitinase OS=Oryza nivara OX=4536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 11 | AH02.577, AH03.569, BH02.583, BH03.679, BH09.49, CH01.303 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_5AG0407920, gene-QOZ80_5BG0456240 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0313620.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 9 | gene-QYE76_004315, gene-QYE76_053699, gene-QYE76_060580 ... |
| Poaceae | Oryza coarctata | 1 | Oco07G001020 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g06160.1, LOC_Os04g01860.1 |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_05G055500, gene-BS78_06G012600, gene-BS78_K195600 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr25G016660 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G489100, Tel5E01G776200 |
| Poaceae | Triticum dicoccoides | 8 | gene_TRIDC3AG067650, gene_TRIDC3BG071900 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3B02G334100.1, TraesCS3D02G299500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb092630_P001 |
| Poaceae | Zoysia japonica | 11 | nbis-gene-3291, nbis-gene-37499, nbis-gene-37500 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g19235, Zma_g19238, Zma_g20806, Zma_g3637 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000034l.10 |