Basic Information
Locus ID:
nbis-gene-53623
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00191.1 | 74207 | 86717 | - | nbis-gene-53623 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 154,058.80 Da | 49.31 | 83.52 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1321 | 1426 | 5.6E-19 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 178 | 640 | 6.14E-42 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1321 | 1439 | 8.76E-22 | IPR035983 |
| Gene3D | G3DSA:1.25.10.10 | - | 167 | 482 | 9.0E-53 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1359 | 1426 | 5.3E-14 | - |
| SMART | SM00119 | hect_3 | 1151 | 1446 | 0.0067 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1322 | 1430 | 13.630839 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 506 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1022 | 1063 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1126 | 1147 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 970 | 1068 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1083 | 1106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 655 | 690 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 970 | 1011 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_002447553.2 | E3 ubiquitin-protein ligase UPL3 [Sorghum bicolor] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TPJ3 | HECT-type E3 ubiquitin transferase OS=Eragrostis curvula OX=38414 GN=EJB05_40379 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology