HalophFGD

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Basic Information
Locus ID: nbis-gene-53447
Species & Taxonomic ID: Zoysia japonica & 309978
Genome Assembly: GCA_040438285.1
Description: GTPase-activator protein for Rho-like GTPases
Maps and Mapping Data
Chromosome Start End Strand ID
Zjn_sc00184.1 68963 76297 - nbis-gene-53447
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
4.65 57,605.62 Da 59.98 69.70 -0.68
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
MobiDBLite mobidb-lite consensus disorder prediction 401 433 - -
MobiDBLite mobidb-lite consensus disorder prediction 190 220 - -
Coils Coil Coil 275 295 - -
Coils Coil Coil 472 492 - -
Coils Coil Coil 45 65 - -
KEGG Pathway
KO Term:
K20642 (Rho GTPase-activating protein 22/24/25)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G12150.2 Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. 0
RefSeq XP_021304538.1 rho GTPase-activating protein REN1 isoform X1 [Sorghum bicolor] 0
Swiss-Prot Q9FMP8 Rho GTPase-activating protein 6 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP6 PE=2 SV=1 0
TrEMBL A0A5J9SQL6 Rho GTPase-activating protein REN1 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_53344 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 6 jg10792, jg16216, jg16353, jg35607, jg6142, jg8522
Aizoaceae Mesembryanthemum crystallinum 2 gene_11774, gene_23365
Amaranthaceae Atriplex hortensis 3 Ah005078, Ah012278, Ah023719
Amaranthaceae Beta vulgaris 2 BVRB_1g007850, BVRB_4g073750
Amaranthaceae Salicornia bigelovii 4 Sbi_jg17790, Sbi_jg4168, Sbi_jg49634, Sbi_jg62450
Amaranthaceae Salicornia europaea 2 Seu_jg1024, Seu_jg5615
Amaranthaceae Suaeda aralocaspica 2 GOSA_00001020, GOSA_00007213
Amaranthaceae Suaeda glauca 2 Sgl10570, Sgl61679
Amaranthaceae Chenopodium album 4 gene:ENSEOMG00000010800, gene:ENSEOMG00000013959 ...
gene:ENSEOMG00000026994, gene:ENSEOMG00000040372
Amaranthaceae Chenopodium quinoa 4 CQ.Regalona.r1.1AG0010740, CQ.Regalona.r1.1BG0015060 ...
CQ.Regalona.r1.4AG0002250, CQ.Regalona.r1.4BG0002330
Anacardiaceae Pistacia vera 2 pistato.v30041760, pistato.v30050660
Apiaceae Apium graveolens 3 Ag1G01020, Ag2G00498, Ag9G01469
Arecaceae Cocos nucifera 2 COCNU_02G017870, COCNU_16G001940
Arecaceae Phoenix dactylifera 4 gene-LOC103695721, gene-LOC103701658, gene-LOC103716927 ...
gene-LOC120111581
Asparagaceae Asparagus officinalis 3 AsparagusV1_03.1554.V1.1, AsparagusV1_05.61.V1.1 ...
AsparagusV1_07.1656.V1.1
Asteraceae Flaveria trinervia 6 Ftri10G10531, Ftri16G19225, Ftri17G12387, Ftri18G02868 ...
Ftri2G10438, Ftri6G00381
Brassicaceae Arabidopsis thaliana 3 AT4G24580.1, AT5G12150.1, AT5G19390.1
Brassicaceae Eutrema salsugineum 3 Thhalv10012649m.g.v1.0, Thhalv10012698m.g.v1.0 ...
Thhalv10024336m.g.v1.0
Brassicaceae Schrenkiella parvula 3 Sp6g25020.v2.2, Sp6g31480.v2.2, Sp7g22580.v2.2
Brassicaceae Brassica nigra 6 BniB02g043320.2N, BniB02g049950.2N, BniB02g081270.2N ...
BniB03g013070.2N, BniB05g012620.2N, BniB05g044290.2N
Casuarinaceae Casuarina equisetifolia 2 Ceq03G1219, Ceq05G1615
Casuarinaceae Casuarina glauca 2 Cgl03G1323, Cgl05G1611
Cymodoceaceae Cymodocea nodosa 3 gene.Cymno05g05610, gene.Cymno09g01250, gene.Cymno11g10110
Hydrocharitaceae Thalassia testudinum 2 gene.Thate06g07490, gene.Thate06g22020
Malvaceae Hibiscus hamabo Siebold & Zucc. 2 nbisL1-mrna-12393, nbisL1-mrna-8782
Nitrariaceae Nitraria sibirica 2 evm.TU.LG06.1580, evm.TU.LG09.125
Plantaginaceae Plantago ovata 3 Pov_00017200, Pov_00027423, Pov_00037198
Plumbaginaceae Limonium bicolor 4 Lb3G15599, Lb3G15600, Lb3G15601, Lb6G31384
Poaceae Echinochloa crus-galli 12 AH01.3596, AH01.4299, AH03.3949, AH06.31, BH01.3943, BH06.28 ...
BH01.4604, BH03.4248, CH01.4207, CH01.4915, CH06.25, CH07.250
Poaceae Eleusine coracana subsp. coracana 7 gene-QOZ80_3AG0248760, gene-QOZ80_3BG0279500 ...
gene-QOZ80_3BG0286460, gene-QOZ80_6AG0505710, gene-QOZ80_6BG0457750, gene-QOZ80_7AG0580160, gene-QOZ80_7BG0611260
Poaceae Hordeum vulgare 3 HORVU.MOREX.r3.2HG0117090.1, HORVU.MOREX.r3.4HG0372920.1 ...
HORVU.MOREX.r3.4HG0390910.1
Poaceae Lolium multiflorum 5 gene-QYE76_008107, gene-QYE76_039096, gene-QYE76_067737 ...
gene-QYE76_067785, gene-QYE76_069178
Poaceae Oryza coarctata 6 Oco05G008570, Oco05G013820, Oco06G008890, Oco06G012530 ...
Oco13G014760, Oco14G015580
Poaceae Oryza sativa 4 LOC_Os03g11140.1, LOC_Os03g15180.1, LOC_Os03g24180.1 ...
LOC_Os07g46450.1
Poaceae Paspalum vaginatum 4 gene-BS78_01G350500, gene-BS78_01G412700 ...
gene-BS78_02G370000, gene-BS78_10G002900
Poaceae Puccinellia tenuiflora 4 Pt_Chr0102111, Pt_Chr0102140, Pt_Chr0102745, Pt_Chr0305060
Poaceae Sporobolus alterniflorus 9 Chr01G034960, Chr04G011620, Chr07G011030, Chr10G001070 ...
Chr12G004650, Chr14G000100, Chr14G000440, Chr19G000910, Chr27G016520
Poaceae Thinopyrum elongatum 3 Tel2E01G271600, Tel4E01G289600, Tel4E01G383000
Poaceae Triticum dicoccoides 6 gene_TRIDC2AG016170, gene_TRIDC2BG019470 ...
gene_TRIDC4AG011490, gene_TRIDC4AG025330, gene_TRIDC4BG027380, gene_TRIDC4BG038860
Poaceae Triticum aestivum 9 TraesCS2A02G131400.3, TraesCS2B02G153800.3 ...
TraesCS2D02G133500.2, TraesCS4A02G084500.1, TraesCS4A02G163400.1, TraesCS4B02G153200.1, TraesCS4B02G219700.1, TraesCS4D02G163800.1, TraesCS4D02G220100.1
Poaceae Zea mays 8 Zm00001eb011160_P001, Zm00001eb017310_P001 ...
Zm00001eb110720_P002, Zm00001eb222720_P001, Zm00001eb268580_P001, Zm00001eb329690_P003, Zm00001eb379420_P001, Zm00001eb398340_P001
Poaceae Zoysia japonica 4 nbis-gene-1544, nbis-gene-3267, nbis-gene-51235 ...
nbis-gene-53447
Poaceae Zoysia macrostachya 5 Zma_g1181, Zma_g28959, Zma_g31212, Zma_g3617, Zma_g5711
Portulacaceae Portulaca oleracea 6 evm.TU.LG04.1884, evm.TU.LG06.470, evm.TU.LG08.1425 ...
evm.TU.LG18.1688, evm.TU.LG20.196, evm.TU.LG22.321
Posidoniaceae Posidonia oceanica 2 gene.Posoc01g13630, gene.Posoc08g04230
Rhizophoraceae Bruguiera sexangula 5 evm.TU.Scaffold_12_RagTag.80, evm.TU.Scaffold_13_RagTag.984 ...
evm.TU.Scaffold_7_RagTag.933, evm.TU.Scaffold_8_RagTag.809, evm.TU.Scaffold_8_RagTag.810
Rhizophoraceae Carallia pectinifolia 3 nbisL1-mrna-19397, nbisL1-mrna-24720, nbisL1-mrna-9429
Rhizophoraceae Ceriops tagal 4 nbisL1-mrna-15707, nbisL1-mrna-18063, nbisL1-mrna-20611 ...
nbisL1-mrna-4915
Rhizophoraceae Ceriops zippeliana 4 nbisL1-mrna-16345, nbisL1-mrna-19388, nbisL1-mrna-20535 ...
nbisL1-mrna-6761
Rhizophoraceae Kandelia candel 5 evm.TU.utg000002l.711, evm.TU.utg000002l.712 ...
evm.TU.utg000015l.585, evm.TU.utg000018l.479, evm.TU.utg000027l.524
Rhizophoraceae Kandelia obovata 3 Maker00003117, Maker00015901, Maker00018181
Rhizophoraceae Rhizophora apiculata 4 nbisL1-mrna-11507, nbisL1-mrna-13051, nbisL1-mrna-4491 ...
nbisL1-mrna-5473
Rhizophoraceae Rhizophora mangle 4 nbisL1-mrna-10178, nbisL1-mrna-11618, nbisL1-mrna-17031 ...
nbisL1-mrna-20810
Salicaceae Populus euphratica 5 populus_peu01790, populus_peu11981, populus_peu14556 ...
populus_peu32194, populus_peu36029
Solanaceae Lycium barbarum 4 gene-LOC132619321, gene-LOC132626383, gene-LOC132627612 ...
gene-LOC132643649
Solanaceae Solanum chilense 3 SOLCI001222600, SOLCI002313900, SOLCI003459600
Solanaceae Solanum pennellii 3 gene-LOC107004985, gene-LOC107006844, gene-LOC107018168
Tamaricaceae Reaumuria soongarica 3 gene_15073, gene_5833, gene_9604
Tamaricaceae Tamarix chinensis 3 TC02G2930, TC03G3003, TC09G2514
Zosteraceae Zostera marina 3 Zosma01g10370.v3.1, Zosma03g17740.v3.1, Zosma06g13270.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.