Basic Information
Locus ID:
nbis-gene-53247
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00177.1 | 232681 | 240187 | + | nbis-gene-53247 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.47 | 124,227.30 Da | 60.48 | 89.07 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01603 | Protein phosphatase 2A regulatory B subunit (B56 family) | 697 | 1112 | 3.3E-140 | IPR002554 |
| Pfam | PF01535 | PPR repeat | 283 | 309 | 0.56 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 453 | 492 | 1.0E-8 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 383 | 431 | 1.3E-16 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 320 | 345 | 5.6E-4 | IPR002885 |
| SUPERFAMILY | SSF48371 | ARM repeat | 709 | 1086 | 3.45E-108 | IPR016024 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 228 | 348 | 2.7E-11 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 447 | 493 | 1.9E-10 | IPR011990 |
| Gene3D | G3DSA:1.25.10.10 | - | 703 | 1110 | 4.0E-135 | IPR011989 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 349 | 446 | 1.9E-24 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 421 | 455 | 9.3E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 457 | 490 | 2.2E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 386 | 420 | 4.1E-10 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 320 | 345 | 0.0018 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 454 | 488 | 12.287675 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 384 | 418 | 14.61147 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 419 | 453 | 11.8273 | IPR002885 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04113 (Meiosis - yeast)
map04113 (Meiosis - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03470.1 | Protein phosphatase 2A regulatory B subunit family protein. Encodes B' regulatory subunit of PP2A (AtB'alpha), putative size of 57 kDa. | 0 |
| RefSeq | XP_039823812.1 | serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform-like [Panicum virgatum] | 0 |
| O04375 | Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform OS=Arabidopsis thaliana OX=3702 GN=B'ALPHA PE=1 SV=1 | 0 | |
| TrEMBL | A0A1E5WEA4 | Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform (Fragment) OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0003253 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology