Basic Information
Locus ID:
nbis-gene-53144
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00174.1 | 247508 | 248154 | - | nbis-gene-53144 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 22,496.19 Da | 37.06 | 96.99 | 0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 150 | 193 | 1.42804E-16 | - |
| Pfam | PF13639 | Ring finger domain | 151 | 193 | 1.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 146 | 200 | 1.69E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 198 | 7.8E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 151 | 192 | 2.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 151 | 193 | 12.415513 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60966.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004954592.1 | RING-H2 finger protein ATL43 [Setaria italica] | 0 |
| Q8L9W3 | E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana OX=3702 GN=ATL23 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9VCP9 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_25042 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 8 | AH07.1025, AH07.1027, AH07.1028, BH07.1144, BH07.1146 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_2AG0107740, gene-QOZ80_2AG0108990 ... |
| Poaceae | Oryza coarctata | 3 | Oco03G006770, Oco04G007040, Oco04G007050 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g15000.1, LOC_Os02g15010.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G104000, gene-BS78_04G104100 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G013650, Chr0G033270, Chr15G023350 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G503100, Tel1E01G503200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1BG052490, gene_TRIDC1BG052500 |
| Poaceae | Triticum aestivum | 14 | TraesCS1A02G311600.1.cds1, TraesCS1B02G323200.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb238450_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34201, nbis-gene-53144 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12514, Zma_g15401 |