Basic Information
Locus ID:
nbis-gene-53142
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00174.1 | 241787 | 242596 | - | nbis-gene-53142 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.74 | 29,605.35 Da | 55.38 | 73.27 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 195 | 238 | 2.36582E-17 | - |
| Pfam | PF13639 | Ring finger domain | 195 | 238 | 2.2E-15 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 186 | 244 | 8.95E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 175 | 243 | 2.6E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 196 | 237 | 5.9E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 196 | 238 | 12.931868 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 156 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66070.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034607218.1 | E3 ubiquitin-protein ligase EL5-like [Setaria viridis] | 0 |
| Q9FKX5 | NEP1-interacting protein-like 1 OS=Arabidopsis thaliana OX=3702 GN=ATL27 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9VC60 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_25049 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH07.1022, BH07.1136, BH07.1141, CH07.914, CH07.920 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0107690, gene-QOZ80_2AG0107720 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0575080.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_022027, gene-QYE76_048206 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G103600 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G013640, Chr0G033280, Chr15G023360 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G344800 |
| Poaceae | Triticum aestivum | 1 | TraesCS6A02G172100.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb238470_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34205, nbis-gene-53142 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12513 |