Basic Information
Locus ID:
nbis-gene-52831
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the leguminous lectin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00166.1 | 22153 | 22971 | - | nbis-gene-52831 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 29,115.42 Da | 40.71 | 83.53 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 33 | 265 | 9.01802E-48 | IPR001220 |
| Pfam | PF00139 | Legume lectin domain | 33 | 267 | 2.9E-46 | IPR001220 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 33 | 266 | 1.4E-51 | IPR013320 |
| Gene3D | G3DSA:2.60.120.200 | - | 32 | 271 | 5.9E-53 | - |
| PIRSF | PIRSF002690 | Plant_L_lectin | 9 | 270 | 4.8E-48 | IPR016363 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004971117.1 | L-type lectin-domain containing receptor kinase IX.2 [Setaria italica] | 0 |
| TrEMBL | A0A5J9TJC1 | Protein kinase domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_45058 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | BH02.4399, CH02.4447, CH04.698 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0044910, gene-QOZ80_6BG0472060 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0103660.1, HORVU.MOREX.r3.3HG0325350.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_033622, gene-QYE76_033626, gene-QYE76_038280 ... |
| Poaceae | Oryza sativa | 1 | LOC_Os08g24670.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G182600 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G033140, Chr05G000710 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G130100, Tel2E01G132800 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2AG006430 |
| Poaceae | Triticum aestivum | 8 | TraesCS2A02G055200.1, TraesCS2A02G057000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb142870_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52831 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26408 |