Basic Information
Locus ID:
nbis-gene-52305
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
K-box region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00155.1 | 110109 | 115164 | + | nbis-gene-52305 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.48 | 27,929.64 Da | 56.73 | 84.19 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 43 | 108 | 5.98221E-35 | IPR033896 |
| Pfam | PF01486 | K-box region | 122 | 164 | 7.3E-8 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 42 | 89 | 1.6E-25 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 35 | 114 | 2.62E-28 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 45 | 117 | 7.9E-27 | IPR036879 |
| SMART | SM00432 | madsneu2 | 33 | 92 | 7.7E-35 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 33 | 93 | 28.875334 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 35 | 89 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 55 | 70 | 6.5E-28 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 35 | 55 | 6.5E-28 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 70 | 91 | 6.5E-28 | IPR002100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 38 | - | - |
| Coils | Coil | Coil | 121 | 141 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45660.2 | - | 0 |
| RefSeq | XP_012701695.1 | MADS-box protein SOC1 isoform X2 [Setaria italica] | 0 |
| O64645 | MADS-box protein SOC1 OS=Arabidopsis thaliana OX=3702 GN=SOC1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4Y6I1L2 | SOC1 OS=Zoysia japonica OX=309978 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology