Basic Information
Locus ID:
nbis-gene-51998
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
USP8 dimerisation domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00151.1 | 72994 | 80490 | + | nbis-gene-51998 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 18,998.43 Da | 40.90 | 91.63 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 71 | 119 | 6.6E-9 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 58 | 146 | 3.01E-13 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 40 | 166 | 1.3E-40 | - |
| ProSiteProfiles | PS50249 | MPN domain profile. | 12 | 146 | 14.297397 | IPR037518 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10600.2 | associated molecule with the SH3 domain of STAM 2. | 0 |
| RefSeq | XP_020397753.1 | mov34/MPN/PAD-1 family protein isoform X1 [Zea mays] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1D6FIR7 | AMSH-like ubiquitin thioesterase 3 OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d009324 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology