Basic Information
Locus ID:
nbis-gene-51942
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
UBP2
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00150.1 | 199550 | 202225 | + | nbis-gene-51942 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.06 | 14,240.82 Da | 46.97 | 84.76 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 42 | 123 | 3.1E-13 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 37 | 124 | 2.94E-19 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 4 | 124 | 1.0E-21 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 124 | 15.827004 | IPR028889 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_022683291.1 | ubiquitin carboxyl-terminal hydrolase 2 [Setaria italica] | 0 |
| Q9Y5T5 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Homo sapiens OX=9606 GN=USP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9W8M8 | USP domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_10241 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology