Basic Information
Locus ID:
nbis-gene-51542
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00145.1 | 83662 | 85111 | - | nbis-gene-51542 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.19 | 34,433.30 Da | 55.83 | 85.42 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 270 | 311 | 3.7E-7 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 269 | 315 | 2.27E-8 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 33 | 86 | 1.26E-6 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 100 | 220 | 8.63E-11 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 263 | 314 | 4.2E-8 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 48 | 246 | 1.4E-14 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 269 | 311 | 10.971794 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_034607107.1 | F-box protein At1g67340-like isoform X2 [Setaria viridis] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835FGE3 | MYND-type domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_011448 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology