Basic Information
Locus ID:
nbis-gene-51497
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Ribosome inactivating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00144.1 | 306917 | 307651 | + | nbis-gene-51497 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 26,920.48 Da | 31.74 | 86.43 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 9 | 199 | 1.4E-45 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 5 | 236 | 9.69E-46 | IPR036041 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 1 | 159 | 4.8E-38 | IPR016138 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 9 | 22 | 5.7E-8 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 149 | 169 | 5.7E-8 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 59 | 74 | 5.7E-8 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 183 | 200 | 5.7E-8 | IPR017989 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002456293.2 | protein synthesis inhibitor II [Sorghum bicolor] | 0 |
| P25891 | Ribosome-inactivating protein 3 OS=Zea mays OX=4577 GN=CRIP3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9SQY3 | rRNA N-glycosylase OS=Eragrostis curvula OX=38414 GN=EJB05_53147 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology