Basic Information
Locus ID:
nbis-gene-51396
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
PPR repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00143.1 | 288947 | 292930 | - | nbis-gene-51396 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 70,231.32 Da | 44.89 | 74.57 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 304 | 330 | 1.2E-6 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 367 | 396 | 4.9E-8 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 130 | 156 | 5.0E-9 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 194 | 214 | 0.022 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 335 | 364 | 1.4E-7 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 162 | 188 | 1.0E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 273 | 302 | 3.0E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 65 | 91 | 0.014 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 230 | 251 | 2.0E-5 | IPR002885 |
| SUPERFAMILY | SSF48452 | TPR-like | 201 | 412 | 1.14E-7 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 331 | 418 | 2.6E-19 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 34 | 111 | 3.2E-12 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 189 | 258 | 5.0E-9 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 112 | 188 | 3.0E-21 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 259 | 330 | 7.1E-17 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 162 | 187 | 1.1E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 273 | 303 | 4.1E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 229 | 252 | 1.3E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 335 | 364 | 6.2E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 130 | 156 | 1.7E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 65 | 92 | 0.0019 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 367 | 397 | 2.0E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 304 | 329 | 3.3E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 128 | 162 | 12.079411 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 63 | 97 | 8.79102 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 368 | 398 | 8.53891 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 271 | 305 | 10.380408 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 226 | 256 | 9.20755 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 333 | 367 | 11.936913 | IPR002885 |
| Coils | Coil | Coil | 557 | 577 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08510.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_039843020.1 | pentatricopeptide repeat-containing protein At1g62260, mitochondrial-like [Panicum virgatum] | 0 |
| Q9FNN7 | Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E20 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6PFT2 | Pentatricopeptide repeat-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM10G07580 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology