Basic Information
Locus ID:
nbis-gene-5122
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00004.1 | 1366000 | 1374251 | + | nbis-gene-5122 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.07 | 91,155.71 Da | 61.81 | 66.75 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 541 | 588 | 1.3E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 462 | 524 | 9.4E-15 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 462 | 531 | 1.65E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 419 | 474 | 2.24E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 543 | 591 | 1.94E-16 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 520 | 779 | 1.0E-82 | - |
| SMART | SM00647 | ibrneu5 | 462 | 524 | 8.9E-23 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 537 | 598 | 0.046 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 370 | 602 | 40.913849 | IPR044066 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 780 | 816 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 780 | 827 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_037486154.1 | probable E3 ubiquitin-protein ligase ARI8 [Triticum dicoccoides] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6B1I3 | RBR-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology